PROCHECK-NMR v.3.5.4

PROCHECK-NMR is a suite of programs that have been derived from the PROCHECK programs to analyse ensembles of protein structures solved by NMR.

The output plots are in PostScript format and fall into two groups:-

• Geometry plots - which analyse and compare the stereochemical geometry of the structures in the ensemble, and

• Restraint analyses - which plot the experimental restraints (both in terms of distance and dihedral angle restraints) and the restraint violations computed by AQUA (written by Ton Rullmann) for all the models making up the ensemble. (Note that the latest version of AQUA can be obtained from http://www.bmrb.wisc.edu/~jurgen/aqua/.)

The plots can be in colour or black-and-white.

For more information, and sample plots, see:

Operating Instructions
Sample outputs

Reference

Availability

Source code can be picked up from the directory:-

pub/procheck/tar3_5

This contains the following compressed tar files files:-

• procheck.tar.Z - The source code for PROCHECK v.3.5.4 (which includes PROCHECK-NMR).

• nmr_manual.tar.Z - Documentation for PROCHECK-NMR and AQUA.

You can also have a look at the README file to get more up-to-date information about the program before downloading it.

Requirements

Before using PROCHECK-NMR you will need to sign a Confidentiality Agreement.

For further information please contact:

Roman Laskowski
European Bioinformatics Institute,
Wellcome Trust Genome Campus,
Hinxton,
Cambridge, CB10 1SD,
United Kingdom


Fax:- +44 (0)1223 494 468

E-mail:- roman@ebi.ac.uk

Related programs:

• AQUA (old version) or AQUA (new version)
• PROCHECK
• PROCOMP